Last updated: 2018-08-27

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correlation matrix of all regulator expression

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spearman correlation of all regulator expression with ssgsea scores of target sets

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Spearman correlation of all regulator expression with ssgsea scores of goslim

Session information

sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.4

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8

attached base packages:
 [1] grid      parallel  stats4    stats     graphics  grDevices utils    
 [8] datasets  methods   base     

other attached packages:
 [1] bindrcpp_0.2.2       knitr_1.20           heatmaply_0.15.2    
 [4] viridis_0.5.1        viridisLite_0.3.0    plotly_4.8.0        
 [7] gplots_3.0.1         GO.db_3.6.0          GSEABase_1.42.0     
[10] graph_1.58.0         GSVA_1.28.0          reshape_0.8.7       
[13] ggplot2_3.0.0        GEOquery_2.48.0      annotate_1.58.0     
[16] XML_3.98-1.11        org.Hs.eg.db_3.6.0   AnnotationDbi_1.42.1
[19] IRanges_2.14.10      S4Vectors_0.18.3     Biobase_2.40.0      
[22] BiocGenerics_0.26.0  limma_3.36.2         htmlwidgets_1.2     

loaded via a namespace (and not attached):
 [1] colorspace_1.3-2    class_7.3-14        modeltools_0.2-22  
 [4] mclust_5.4.1        rprojroot_1.3-2     flexmix_2.3-14     
 [7] bit64_0.9-7         mvtnorm_1.0-8       xml2_1.2.0         
[10] codetools_0.2-15    R.methodsS3_1.7.1   robustbase_0.93-2  
[13] geneplotter_1.58.0  shinythemes_1.1.1   jsonlite_1.5       
[16] workflowr_1.1.1     cluster_2.0.7-1     kernlab_0.9-26     
[19] R.oo_1.22.0         shiny_1.1.0         readr_1.1.1        
[22] compiler_3.5.0      httr_1.3.1          backports_1.1.2    
[25] assertthat_0.2.0    lazyeval_0.2.1      later_0.7.3        
[28] htmltools_0.3.6     tools_3.5.0         gtable_0.2.0       
[31] glue_1.2.0          dplyr_0.7.6         Rcpp_0.12.17       
[34] trimcluster_0.1-2.1 gdata_2.18.0        crosstalk_1.0.0    
[37] iterators_1.0.10    fpc_2.1-11.1        stringr_1.3.1      
[40] mime_0.5            gtools_3.8.1        dendextend_1.8.0   
[43] DEoptimR_1.0-8      MASS_7.3-50         scales_0.5.0       
[46] TSP_1.1-6           hms_0.4.2           promises_1.0.1     
[49] RColorBrewer_1.1-2  yaml_2.1.19         memoise_1.1.0      
[52] gridExtra_2.3       stringi_1.2.3       RSQLite_2.1.1      
[55] gclus_1.3.1         foreach_1.4.4       seriation_1.2-3    
[58] caTools_1.17.1      rlang_0.2.1         pkgconfig_2.0.1    
[61] prabclus_2.2-6      bitops_1.0-6        evaluate_0.10.1    
[64] lattice_0.20-35     purrr_0.2.5         bindr_0.1.1        
[67] bit_1.1-14          tidyselect_0.2.4    plyr_1.8.4         
[70] magrittr_1.5        R6_2.2.2            DBI_1.0.0          
[73] pillar_1.2.3        whisker_0.3-2       withr_2.1.2        
[76] RCurl_1.95-4.10     nnet_7.3-12         tibble_1.4.2       
[79] KernSmooth_2.23-15  rmarkdown_1.10      data.table_1.11.4  
[82] blob_1.1.1          git2r_0.22.1        digest_0.6.15      
[85] diptest_0.75-7      webshot_0.5.0       xtable_1.8-2       
[88] tidyr_0.8.1         httpuv_1.4.4.2      R.utils_2.6.0      
[91] munsell_0.5.0       registry_0.5

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